http://bioconductor.jp/packages/3.12/bioc/html/simpleaffy.html Webb8 nov. 2024 · In simpleaffy: Very simple high level analysis of Affymetrix data. Description Arguments Details Usage Author(s) See Also Examples. View source: R/qc.stats.R. …
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WebbTo view documentation for the version of this package installed in your system, start R and enter: browseVignettes ("simpleaffy") Details Package Archives Follow Installation … WebbBioconductor version: 3.9. Provides high level functions for reading Affy .CEL files, phenotypic data, and then computing simple things with it, such as t-tests, fold changes and the like. Makes heavy use of the affy library. Also has some basic scatter plot functions and mechanisms for generating high resolution journal figures... rabbit room reading list
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Webb28 aug. 2024 · I have installed simpleaffy package, then when I try to use it appears an error. library(simpleaffy) Loading required package: genefilter Error: package or … Webb8 nov. 2024 · simpleaffy / pairwise.comparison: Compute pairwise comparison statistics between two... pairwise.comparison: Compute pairwise comparison statistics between two... In simpleaffy: Very simple high level analysis of Affymetrix data Description Usage Arguments Details Value Author (s) References Examples Description WebbThe raw data was read with the simpleaffy, normalized and log transformed in batches using gene-chip robust multiarray averaging (GCRMA) and probe level data summarized to gene level expression with custom CDF for affymetrix HG-U133_Plus_2 arrays based on Entrez genes (hgu133ahsentrezgcdf_24.0.0). The normalized expression files were then … shoal\\u0027s n4